Introducing Helical MCPBio Foundation models
for every researcher.

Use and post-train biological foundation models on your data. Directly in Codex.

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Start with something concrete

Cookbook quickstart tutorials

Getting started: embeddings and UMAP
Install the Helical plugin in Codex, embed a dataset, and plot a UMAP of the result
Muhammad Ali
Open recipe
Benchmarking bio foundation model embeddings with scIB
Embed the scIB pancreas task with scGPT and Geneformer through the MCP, then score and plot the results
Titouan Chambe
Open recipe
Finding spatial niches with Nicheformer
Embed an NSCLC Visium study with Nicheformer, define spot states and niches, and test them on held-out patients
Muhammad Ali
Open recipe

Biological foundation models

One connection. A growing model library.

Geneformer
scGPT
TranscriptFormer
Cell2Sentence
Nicheformer
BulkFormer
PerturbGen

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Helical for Pharma

Building for your whole organisation?

Bring your proprietary data, model adaptation and scientific evaluations together across your discovery programmes.

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